gDRcore

Processing functions and interface to process and analyze drug dose-response data

Bioconductor version: 3.23 · Package version: 1.10.0

This package contains core functions to process and analyze drug response data. The package provides tools for normalizing, averaging, and calculation of gDR metrics data. All core functions are wrapped into the pipeline function allowing analyzing the data in a straightforward way.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("gDRcore")

Details

Maintainer	Arkadiusz Gladki <gladki.arkadiusz@gmail.com>
Author	Bartosz Czech [aut] (ORCID: <https://orcid.org/0000-0002-9908-3007>), Arkadiusz Gladki [cre, aut] (ORCID: <https://orcid.org/0000-0002-7059-6378>), Marc Hafner [aut] (ORCID: <https://orcid.org/0000-0003-1337-7598>), Pawel Piatkowski [aut], Natalia Potocka [aut], Dariusz Scigocki [aut], Janina Smola [aut], Sergiu Mocanu [aut], Marcin Kamianowski [aut], Allison Vuong [aut]
License	Artistic-2.0
URL	https://github.com/gdrplatform/gDRcore, https://gdrplatform.github.io/gDRcore/
Bug Reports	https://github.com/gdrplatform/gDRcore/issues
Downloads rank	209
Source branch	RELEASE_3_23
biocViews	ShinyApps, Software

Documentation

Download

Source package

Dependencies

Depends: R (>= 4.2)

Imports: BumpyMatrix, BiocParallel, checkmate, futile.logger, gDRutils (>= 1.7.1), MultiAssayExperiment, purrr, stringr, S4Vectors, SummarizedExperiment, data.table

Suggests: BiocStyle, gDRstyle (>= 1.7.1), gDRimport (>= 1.7.1), gDRtestData (>= 1.7.1), IRanges, knitr, pkgbuild, qs2, testthat, yaml

Reverse dependencies

Depends On Me (1): gDR