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gDNAinRNAseqData

RNA-seq data with different levels of gDNA contamination

Bioconductor version: 3.23 · Package version: 1.12.0

Provides access to BAM files generated from RNA-seq data produced with different levels of gDNA contamination. It currently allows one to download a subset of the data published by Li et al., BMC Genomics, 23:554, 2022. This subset of data is formed by BAM files with about 100,000 alignments with three different levels of gDNA contamination.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("gDNAinRNAseqData")

Details

MaintainerRobert Castelo <robert.castelo@upf.edu>
AuthorRobert Castelo [aut, cre] (ORCID: <https://orcid.org/0000-0003-2229-4508>)
LicenseArtistic-2.0
URLhttps://github.com/functionalgenomics/gDNAinRNAseqData
Bug Reportshttps://github.com/functionalgenomics/gDNAinRNAseqData
Downloads rank97
Source branchRELEASE_3_23
biocViewsExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, RNASeqData, SequencingData

Download

Dependencies

Depends: R (>= 4.3)

Imports: RCurl, XML, ExperimentHub, BiocGenerics, Rsamtools

Suggests: BiocStyle, knitr, rmarkdown

Reverse dependencies

Suggests Me (1): gDNAx