fourDNData

4DN data package

Bioconductor version: 3.23 · Package version: 1.12.0

fourDNData is a data package giving programmatic access to Hi-C contact matrices uniformly processed by the [4DN consortium](https://www.4dnucleome.org/). The matrices are available in the multi-resolution `.mcool` format.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("fourDNData")

Details

Maintainer	Jacques Serizay <jacquesserizay@gmail.com>
Author	Jacques Serizay [aut, cre]
License	MIT + file LICENSE
URL	https://github.com/js2264/fourDNData
Bug Reports	https://github.com/js2264/fourDNData/issues
Downloads rank	111
Source branch	RELEASE_3_23
biocViews	ExperimentData, SequencingData

Download

Source package

Dependencies

Depends: R (>= 4.2)

Imports: BiocFileCache, HiCExperiment, GenomicRanges, IRanges, S4Vectors, utils, tools

Suggests: rtracklayer, dplyr, testthat, methods, BiocStyle, knitr, rmarkdown