fobitools
Tools for Manipulating the FOBI Ontology
Bioconductor version: 3.23 · Package version: 1.20.0
A set of tools for interacting with the Food-Biomarker Ontology (FOBI). A collection of basic manipulation tools for biological significance analysis, graphs, and text mining strategies for annotating nutritional data.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("fobitools")Details
| Maintainer | Pol Castellano-Escuder <polcaes@gmail.com> |
| Author | Pol Castellano-Escuder [aut, cre] (ORCID: <https://orcid.org/0000-0001-6466-877X>), Alex Sánchez-Pla [aut] (ORCID: <https://orcid.org/0000-0002-8673-7737>) |
| License | GPL-3 |
| URL | https://github.com/pcastellanoescuder/fobitools/ |
| Bug Reports | https://github.com/pcastellanoescuder/fobitools/issues |
| Downloads rank | 253 |
| Source branch | RELEASE_3_23 |
| biocViews | Annotation, BiomedicalInformatics, Cheminformatics, GeneSetEnrichment, GraphAndNetwork, MassSpectrometry, Metabolomics, Pathways, Software, Visualization |
Documentation
- Dietary text annotation
- Simple food over representation analysis (ORA)
- Use case: LC-MS Based Approaches to Investigate Metabolomic Differences in the Urine of Young Women after Drinking Cranberry Juice or Apple Juice
- Use case: Amino Acid Metabolites of Dietary Salt Effects on Blood Pressure in Human Urine
Download
Dependencies
Depends: R (>= 4.1)
Imports: clisymbols, crayon, dplyr, fgsea, ggplot2, ggraph, magrittr, ontologyIndex, purrr, RecordLinkage, stringr, textclean, tictoc, tidygraph, tidyr, vroom
Suggests: BiocStyle, covr, ggrepel, kableExtra, knitr, metabolomicsWorkbenchR, POMA, rmarkdown, rvest, SummarizedExperiment, testthat (>= 2.3.2), tidyverse