flowGraph

Identifying differential cell populations in flow cytometry data accounting for marker frequency

Bioconductor version: 3.23 · Package version: 1.20.0

Identifies maximal differential cell populations in flow cytometry data taking into account dependencies between cell populations; flowGraph calculates and plots SpecEnr abundance scores given cell population cell counts.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowGraph")

Details

Maintainer	Alice Yue <aya43@sfu.ca>
Author	Alice Yue [aut, cre]
License	Artistic-2.0
URL	https://github.com/aya49/flowGraph
Bug Reports	https://github.com/aya49/flowGraph/issues
Downloads rank	210
Source branch	RELEASE_3_23
biocViews	CellBasedAssays, FlowCytometry, ImmunoOncology, Software, StatisticalMethod, Visualization

Documentation

flowGraph: Identifying differential cell populations in flow cytometry data accounting for marker frequency

Download

Source package

Dependencies

Depends: R (>= 4.1)

Imports: effsize, furrr, future, purrr, ggiraph, ggrepel, ggplot2, igraph, Matrix, matrixStats, stats, utils, visNetwork, htmlwidgets, grDevices, methods, stringr, stringi, Rdpack, data.table (>= 1.9.5), gridExtra

Suggests: BiocStyle, dplyr, knitr, rmarkdown, testthat (>= 2.1.0)