flowCore
flowCore: Basic structures for flow cytometry data
Bioconductor version: 3.23 · Package version: 2.24.0
Provides S4 data structures and basic functions to deal with flow cytometry data.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("flowCore")Details
| Maintainer | Mike Jiang <mike@ozette.com> |
| Author | B Ellis [aut], Perry Haaland [aut], Florian Hahne [aut], Nolwenn Le Meur [aut], Nishant Gopalakrishnan [aut], Josef Spidlen [aut], Mike Jiang [aut, cre], Greg Finak [aut], Samuel Granjeaud [ctb] |
| License | Artistic-2.0 |
| System Requirements | GNU make, C++17 |
| Downloads rank | 3663 |
| Source branch | RELEASE_3_23 |
| biocViews | CellBasedAssays, FlowCytometry, ImmunoOncology, Infrastructure, Software |
Documentation
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Dependencies
Depends: R (>= 3.5.0)
Imports: Biobase, BiocGenerics (>= 0.29.2), grDevices, graphics, methods, stats, utils, stats4, Rcpp, matrixStats, cytolib (>= 2.13.1), S4Vectors
LinkingTo: cpp11, BH (>= 1.81.0.0), cytolib, RProtoBufLib
Suggests: Rgraphviz, flowViz, flowStats (>= 3.43.4), testthat, flowWorkspace, flowWorkspaceData, openCyto, knitr, ggcyto, gridExtra
Reverse dependencies
Depends On Me (17): flowBeads, flowBin, flowClean, flowCut, flowFP, flowMatch, flowTime, flowTrans, flowViz, flowVS, ggcyto, HDCytoData, healthyFlowData, highthroughputassays, immunoClust, infinityFlow, ncdfFlow
Imports Me (42): CATALYST, cmapR, CompensAID, CONFESS, cyanoFilter, cydar, CytoDx, cytofQC, CytoMDS, cytoMEM, CytoML, CytoPipeline, CytoPipelineGUI, ddPCRclust, diffcyt, flowAI, flowBeads, flowCHIC, flowClust, flowDensity, flowGate, flowMeans, flowMerge, flowPloidy, FlowSOM, flowSpecs, flowStats, flowTrans, flowViz, flowWorkspace, GateFinder, MAPFX, MetaCyto, ncdfFlow, openCyto, PeacoQC, scDataviz, scifer, Sconify, staRgate, tidyFlowCore, tidytof
Suggests Me (8): COMPASS, flowPeaks, flowPloidyData, hypergate, MDSvis, MuPETFlow, segmenTier, SuperCellCyto