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flowAI

Automatic and interactive quality control for flow cytometry data

Bioconductor version: 3.23 · Package version: 1.42.0

The package is able to perform an automatic or interactive quality control on FCS data acquired using flow cytometry instruments. By evaluating three different properties: 1) flow rate, 2) signal acquisition, 3) dynamic range, the quality control enables the detection and removal of anomalies.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowAI")

Details

MaintainerGianni Monaco <mongianni1@gmail.com>
AuthorGianni Monaco [aut], Chen Hao [ctb]
LicenseGPL (>= 2)
Downloads rank778
Source branchRELEASE_3_23
biocViewsBiomedicalInformatics, FlowCytometry, ImmunoOncology, QualityControl, Software

Documentation

Download

Dependencies

Depends: R (>= 4.3.0)

Imports: ggplot2, flowCore, plyr, changepoint, knitr, reshape2, RColorBrewer, scales, methods, graphics, stats, utils, rmarkdown

Suggests: testthat, shiny, BiocStyle

Reverse dependencies

Imports Me (1): CytoPipeline

Suggests Me (1): staRgate