fcScan

fcScan for detecting clusters of coordinates with user defined options

Bioconductor version: 3.23 · Package version: 1.26.0

This package is used to detect combination of genomic coordinates falling within a user defined window size along with user defined overlap between identified neighboring clusters. It can be used for genomic data where the clusters are built on a specific chromosome or specific strand. Clustering can be performed with a "greedy" option allowing thus the presence of additional sites within the allowed window size.

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("fcScan")