fastreeR

Phylogenetic, Distance and Other Calculations on VCF and Fasta Files

Bioconductor version: 3.23 · Package version: 2.2.0

Calculate distances, build phylogenetic trees or perform hierarchical clustering between the samples of a VCF or FASTA file. Functions are implemented in Java-11 and called via rJava. Parallel implementation that operates directly on the VCF or FASTA file for fast execution.

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("fastreeR")