fastRanges

Deterministic Multithreaded Genomic Interval Operations

Bioconductor version: 3.23 · Package version: 1.0.0

High-performance interval overlap and join operations for 'IRanges' and 'GenomicRanges'. The package provides deterministic multithreaded overlap computation, reusable subject indexes for repeated queries, and join helpers that keep range metadata in a consistent output grammar.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("fastRanges")

Details

Maintainer	Chirag Parsania <chirag.parsania@gmail.com>
Author	Chirag Parsania [aut, cre] (github: cparsania)
License	Artistic-2.0
URL	https://github.com/cparsania/fastRanges, https://cparsania.github.io/fastRanges/
Bug Reports	https://github.com/cparsania/fastRanges/issues
System Requirements	quarto
Downloads rank	52
Source branch	RELEASE_3_23
biocViews	Infrastructure, Sequencing, Software

Documentation

fastRanges: A Practical Introduction to Genomic Interval Analysis

Download

Source package

Dependencies

Depends: R (>= 4.5.0)

Imports: methods, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb, Rcpp

LinkingTo: Rcpp

Suggests: BiocStyle, testthat (>= 3.0.0), knitr, rmarkdown, pkgdown, XVector, ggplot2, dplyr, tidyr, scales