extraChIPs

Additional functions for working with ChIP-Seq data

Bioconductor version: 3.23 · Package version: 1.16.2

This package builds on existing tools and adds some simple but extremely useful capabilities for working wth ChIP-Seq data. The focus is on detecting differential binding windows/regions. One set of functions focusses on set-operations retaining mcols for GRanges objects, whilst another group of functions are to aid visualisation of results. Coercion to tibble objects is also implemented.

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("extraChIPs")