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ewceData

The ewceData package provides reference data required for ewce

Bioconductor version: 3.23 · Package version: 1.20.0

This package provides reference data required for ewce. Expression Weighted Celltype Enrichment (EWCE) is used to determine which cell types are enriched within gene lists. The package provides tools for testing enrichments within simple gene lists (such as human disease associated genes) and those resulting from differential expression studies. The package does not depend upon any particular Single Cell Transcriptome dataset and user defined datasets can be loaded in and used in the analyses.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ewceData")

Details

MaintainerHiranyamaya Dash <hdash.work@gmail.com>
AuthorAlan Murphy [aut] (ORCID: <https://orcid.org/0000-0002-2487-8753>), Hiranyamaya Dash [cre] (ORCID: <https://orcid.org/0009-0005-5514-505X>), Nathan Skene [aut] (ORCID: <https://orcid.org/0000-0002-6807-3180>)
LicenseArtistic-2.0
URLhttps://github.com/neurogenomics/ewceData
Downloads rank261
Source branchRELEASE_3_23
biocViewsExperimentData, ExperimentHub, ExpressionData, Genome, MicroarrayData, Proteome, RNASeqData, SequencingData, SingleCellData

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Dependencies

Depends: R (>= 4.1), ExperimentHub

Suggests: knitr, BiocStyle, ggplot2, cowplot, rmarkdown, markdown, rbibutils, testthat (>= 3.0.0)

Reverse dependencies

Imports Me (1): EWCE