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esetVis

Visualizations of expressionSet Bioconductor object

Bioconductor version: 3.23 · Package version: 1.38.0

Utility functions for visualization of expressionSet (or SummarizedExperiment) Bioconductor object, including spectral map, tsne and linear discriminant analysis. Static plot via the ggplot2 package or interactive via the ggvis or rbokeh packages are available.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("esetVis")

Details

MaintainerLaure Cougnaud <laure.cougnaud@openanalytics.eu>
AuthorLaure Cougnaud <laure.cougnaud@openanalytics.eu>
LicenseGPL-3
Downloads rank364
Source branchRELEASE_3_23
biocViewsDataRepresentation, DimensionReduction, Pathways, PrincipalComponent, Software, Visualization

Documentation

Download

Dependencies

Imports: mpm, hexbin, Rtsne, MLP, grid, Biobase, MASS, stats, utils, grDevices, methods

Suggests: ggplot2, ggvis, plotly, ggrepel, knitr, rmarkdown, ALL, hgu95av2.db, AnnotationDbi, pander, SummarizedExperiment, GO.db