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erccdashboard

Assess Differential Gene Expression Experiments with ERCC Controls

Bioconductor version: 3.23 · Package version: 1.46.0

Technical performance metrics for differential gene expression experiments using External RNA Controls Consortium (ERCC) spike-in ratio mixtures.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("erccdashboard")

Details

MaintainerSarah Munro <sarah.munro@gmail.com>
AuthorSarah Munro, Steve Lund
LicenseGPL (>=2)
Downloads rank384
Source branchRELEASE_3_23
biocViewsAlternativeSplicing, BatchEffect, DifferentialExpression, DifferentialSplicing, GeneExpression, Genetics, ImmunoOncology, Microarray, MultipleComparison, QualityControl, RNASeq, Software, Transcription, mRNAMicroarray

Documentation

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Dependencies

Depends: R (>= 4.0), ggplot2 (>= 2.1.0), gridExtra (>= 2.0.0)

Imports: edgeR, gplots, grid, gtools, limma, locfit, MASS, plyr, qvalue, reshape2, ROCR, scales, stringr, knitr

Suggests: BiocStyle, knitr, rmarkdown