epistasisGA
An R package to identify multi-snp effects in nuclear family studies using the GADGETS method
Bioconductor version: 3.23 · Package version: 1.14.0
This package runs the GADGETS method to identify epistatic effects in nuclear family studies. It also provides functions for permutation-based inference and graphical visualization of the results.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("epistasisGA")Details
| Maintainer | Michael Nodzenski <michael.nodzenski@gmail.com> |
| Author | Michael Nodzenski [aut, cre], Juno Krahn [ctb] |
| License | GPL-3 |
| URL | https://github.com/mnodzenski/epistasisGA |
| Bug Reports | https://github.com/mnodzenski/epistasisGA/issues |
| Downloads rank | 210 |
| Source branch | RELEASE_3_23 |
| biocViews | GeneticVariability, Genetics, SNP, Software |
Documentation
- Using the GADGETS method to detect epistatic maternally-mediated effects and maternal-fetal interactions
- Detecting GxGxE interactions with case-parent triads using E-GADGETS
- Use of the GADGETS method to identify multi-SNP effects in nuclear families
Download
Dependencies
Depends: R (>= 4.2)
Imports: BiocParallel, data.table, matrixStats, stats, survival, igraph, batchtools, qgraph, grDevices, parallel, ggplot2, grid, bigmemory, graphics, utils
LinkingTo: Rcpp, RcppArmadillo, BH, bigmemory
Suggests: BiocStyle, knitr, rmarkdown, magrittr, kableExtra, testthat (>= 3.0.0)