enrichplot

Visualization of Functional Enrichment Result

Bioconductor version: 3.23 · Package version: 1.32.0

The 'enrichplot' package provides visualization methods for interpreting functional enrichment results from ORA or GSEA analyses. It is designed to work with the 'clusterProfiler' ecosystem and builds on 'ggplot2' for flexible and extensible graphics.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("enrichplot")

Details

Maintainer	Guangchuang Yu <guangchuangyu@gmail.com>
Author	Guangchuang Yu [aut, cre] (ORCID: <https://orcid.org/0000-0002-6485-8781>), Chun-Hui Gao [ctb] (ORCID: <https://orcid.org/0000-0002-1445-7939>)
License	Artistic-2.0
URL	https://yulab-smu.top/contribution-knowledge-mining/
Bug Reports	https://github.com/GuangchuangYu/enrichplot/issues
Downloads rank	28290
Source branch	RELEASE_3_23
biocViews	Annotation, GO, GeneSetEnrichment, KEGG, Pathways, Software, Visualization

Documentation

enrichplot

Download

Source package

Dependencies

Depends: R (>= 4.2.0)

Imports: aplot (>= 0.2.1), DOSE, dplyr, enrichit, ggfun (>= 0.1.7), ggnewscale, ggplot2 (>= 3.5.0), ggrepel (>= 0.9.0), ggtangle (>= 0.0.9), ggtree, GOSemSim (>= 2.37.2), graphics, grid, igraph, methods, purrr, RColorBrewer, reshape2, rlang, scatterpie, stats, tidydr, utils, yulab.utils (>= 0.2.2)

Suggests: AnnotationDbi, clusterProfiler, europepmc, ggarchery, ggforce, ggHoriPlot, ggplotify, ggridges, ggstar, ggtreeExtra, ggupset, glue, grDevices, gridExtra, gson, org.Hs.eg.db, quarto, scales, tibble, tidyr

Reverse dependencies

Imports Me (13): carnation, CBNplot, ChIPseeker, clusterProfiler, damidBind, debrowser, enrichViewNet, epiSeeker, ExpHunterSuite, famat, goatea, MicrobiomeProfiler, ReactomePA

Suggests Me (14): easyEWAS, GeoTcgaData, ggpicrust2, IOBR, ivolcano, mastR, methylGSA, ReporterScore, scFeatures, scGraphVerse, SCpubr, TDbasedUFEadv, tidybulk, VISTA