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eds

eds: Low-level reader for Alevin EDS format

Bioconductor version: 3.23 · Package version: 1.14.0

This packages provides a single function, readEDS. This is a low-level utility for reading in Alevin EDS format into R. This function is not designed for end-users but instead the package is predominantly for simplifying package dependency graph for other Bioconductor packages.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("eds")

Details

MaintainerAvi Srivastava <asrivastava@cs.stonybrook.edu>
AuthorAvi Srivastava [aut, cre], Michael Love [aut, ctb]
LicenseGPL-2
URLhttps://github.com/mikelove/eds
System RequirementsC++11
Downloads rank366
Source branchRELEASE_3_23
biocViewsGeneExpression, RNASeq, Sequencing, SingleCell, Software

Documentation

Download

Dependencies

Depends: Matrix

Imports: Rcpp

LinkingTo: Rcpp

Suggests: knitr, tximportData, testthat (>= 3.0.0)

Reverse dependencies

Imports Me (1): singleCellTK

Suggests Me (1): tximport