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drugTargetInteractions

Drug-Target Interactions

Bioconductor version: 3.23 · Package version: 1.20.0

Provides utilities for identifying drug-target interactions for sets of small molecule or gene/protein identifiers. The required drug-target interaction information is obained from a local SQLite instance of the ChEMBL database. ChEMBL has been chosen for this purpose, because it provides one of the most comprehensive and best annotatated knowledge resources for drug-target information available in the public domain.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("drugTargetInteractions")

Details

MaintainerThomas Girke <thomas.girke@ucr.edu>
AuthorThomas Girke [cre, aut]
LicenseArtistic-2.0
URLhttps://github.com/girke-lab/drugTargetInteractions
Bug Reportshttps://github.com/girke-lab/drugTargetInteractions
Downloads rank255
Source branchRELEASE_3_23
biocViewsBiomedicalInformatics, Cheminformatics, Metabolomics, Pharmacogenetics, Pharmacogenomics, Proteomics, Software

Documentation

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Dependencies

Depends: methods, R (>= 4.1)

Imports: utils, RSQLite, UniProt.ws, biomaRt, ensembldb, BiocFileCache, dplyr, rappdirs, AnnotationFilter, S4Vectors

Suggests: RUnit, BiocStyle, knitr, rmarkdown, ggplot2, reshape2, DT, EnsDb.Hsapiens.v86