drugTargetInteractions
Drug-Target Interactions
Bioconductor version: 3.23 · Package version: 1.20.0
Provides utilities for identifying drug-target interactions for sets of small molecule or gene/protein identifiers. The required drug-target interaction information is obained from a local SQLite instance of the ChEMBL database. ChEMBL has been chosen for this purpose, because it provides one of the most comprehensive and best annotatated knowledge resources for drug-target information available in the public domain.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("drugTargetInteractions") Details
| Maintainer | Thomas Girke <thomas.girke@ucr.edu> |
| Author | Thomas Girke [cre, aut] |
| License | Artistic-2.0 |
| URL | https://github.com/girke-lab/drugTargetInteractions |
| Bug Reports | https://github.com/girke-lab/drugTargetInteractions |
| Downloads rank | 255 |
| Source branch | RELEASE_3_23 |
| biocViews | BiomedicalInformatics, Cheminformatics, Metabolomics, Pharmacogenetics, Pharmacogenomics, Proteomics, Software |
Documentation
Download
Dependencies
Depends: methods, R (>= 4.1)
Imports: utils, RSQLite, UniProt.ws, biomaRt, ensembldb, BiocFileCache, dplyr, rappdirs, AnnotationFilter, S4Vectors
Suggests: RUnit, BiocStyle, knitr, rmarkdown, ggplot2, reshape2, DT, EnsDb.Hsapiens.v86