derfinderPlot

Plotting functions for derfinder

Bioconductor version: 3.23 · Package version: 1.46.0

This package provides plotting functions for results from the derfinder package. This helps separate the graphical dependencies required for making these plots from the core functionality of derfinder.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("derfinderPlot")

Details

Maintainer	Leonardo Collado-Torres <lcolladotor@gmail.com>
Author	Leonardo Collado-Torres [aut, cre] (ORCID: <https://orcid.org/0000-0003-2140-308X>), Andrew E. Jaffe [aut] (ORCID: <https://orcid.org/0000-0001-6886-1454>), Jeffrey T. Leek [aut, ths] (ORCID: <https://orcid.org/0000-0002-2873-2671>)
License	Artistic-2.0
URL	https://github.com/leekgroup/derfinderPlot
Bug Reports	https://support.bioconductor.org/t/derfinderPlot
Downloads rank	497
Source branch	RELEASE_3_23
biocViews	DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software, Visualization

Documentation

Introduction to derfinderPlot

Download

Source package

Dependencies

Depends: R (>= 3.2)

Imports: derfinder (>= 1.1.0), Seqinfo, GenomeInfoDb (>= 1.45.9), GenomicFeatures, GenomicRanges (>= 1.17.40), ggbio (>= 1.13.13), ggplot2, graphics, grDevices, IRanges (>= 1.99.28), limma, methods, plyr, RColorBrewer, reshape2, S4Vectors (>= 0.9.38), scales, utils

Suggests: biovizBase (>= 1.27.2), bumphunter (>= 1.7.6), derfinderData (>= 0.99.0), sessioninfo, knitr (>= 1.6), BiocStyle (>= 2.5.19), org.Hs.eg.db, RefManageR, rmarkdown (>= 0.3.3), testthat, TxDb.Hsapiens.UCSC.hg19.knownGene, covr

Reverse dependencies

Imports Me (1): recountWorkflow

Suggests Me (3): derfinder, GenomicState, regionReport