derfinderHelper

derfinder helper package

Bioconductor version: 3.23 · Package version: 1.46.0

Helper package for speeding up the derfinder package when using multiple cores. This package is particularly useful when using BiocParallel and it helps reduce the time spent loading the full derfinder package when running the F-statistics calculation in parallel.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("derfinderHelper")

Details

Maintainer	Leonardo Collado-Torres <lcolladotor@gmail.com>
Author	Leonardo Collado-Torres [aut, cre] (ORCID: <https://orcid.org/0000-0003-2140-308X>), Andrew E. Jaffe [aut] (ORCID: <https://orcid.org/0000-0001-6886-1454>), Jeffrey T. Leek [aut, ths] (ORCID: <https://orcid.org/0000-0002-2873-2671>)
License	Artistic-2.0
URL	https://github.com/leekgroup/derfinderHelper
Bug Reports	https://support.bioconductor.org/t/derfinderHelper
Downloads rank	785
Source branch	RELEASE_3_23
biocViews	DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software

Documentation

Introduction to derfinderHelper

Download

Source package

Dependencies

Depends: R (>= 3.2.2)

Imports: IRanges (>= 1.99.27), Matrix, methods, S4Vectors (>= 0.2.2)

Suggests: sessioninfo, knitr (>= 1.6), BiocStyle (>= 2.5.19), RefManageR, rmarkdown (>= 0.3.3), testthat, covr

Reverse dependencies

Imports Me (1): derfinder