deconvR

Simulation and Deconvolution of Omic Profiles

Bioconductor version: 3.23 · Package version: 1.18.0

This package provides a collection of functions designed for analyzing deconvolution of the bulk sample(s) using an atlas of reference omic signature profiles and a user-selected model. Users are given the option to create or extend a reference atlas and,also simulate the desired size of the bulk signature profile of the reference cell types.The package includes the cell-type-specific methylation atlas and, Illumina Epic B5 probe ids that can be used in deconvolution. Additionally,we included BSmeth2Probe, to make mapping WGBS data to their probe IDs easier.

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("deconvR")