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dagLogo

dagLogo: a Bioconductor package for visualizing conserved amino acid sequence pattern in groups based on probability theory

Bioconductor version: 3.23 · Package version: 1.50.0

Visualize significant conserved amino acid sequence pattern in groups based on probability theory.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("dagLogo")

Details

MaintainerJianhong Ou <jou@morgridge.org>
AuthorJianhong Ou, Haibo Liu, Alexey Stukalov, Niraj Nirala, Usha Acharya, Lihua Julie Zhu
LicenseGPL (>=2)
Downloads rank476
Source branchRELEASE_3_23
biocViewsSequenceMatching, Software, Visualization

Documentation

Download

Dependencies

Depends: R (>= 3.0.1), methods, grid

Imports: pheatmap, Biostrings, UniProt.ws, BiocGenerics, utils, biomaRt, motifStack, httr

Suggests: XML, grImport, grImport2, BiocStyle, knitr, rmarkdown, testthat