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curatedTBData

Curation of existing tuberculosis transcriptomic studies

Bioconductor version: 3.23 · Package version: 2.8.0

The curatedTBData is an R package that provides standardized, curated tuberculosis(TB) transcriptomic studies. The initial release of the package contains 49 studies. The curatedTBData package allows users to access tuberculosis trancriptomic efficiently and to make efficient comparison for different TB gene signatures across multiple datasets.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("curatedTBData")

Details

MaintainerXutao Wang <xutaow@bu.edu>
AuthorXutao Wang [aut, cre], W. Evan Johnson [aut], Prasad Patil [aut]
LicenseMIT + file LICENSE
URLhttps://github.com/compbiomed/curatedTBData
Bug Reportshttps://github.com/compbiomed/curatedTBData/issues
Downloads rank109
Source branchRELEASE_3_23
biocViewsExperimentData, ExperimentHub, GEO, Homo_sapiens_Data

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Dependencies

Depends: R (>= 4.3.0)

Imports: AnnotationHub, ExperimentHub, MultiAssayExperiment, rlang, stats

Suggests: BiocStyle, DT, dplyr, HGNChelper, knitr, methods, rmarkdown, SummarizedExperiment, sva, testthat

Reverse dependencies

Suggests Me (1): BatchQC