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crisprShiny

Exploring curated CRISPR gRNAs via Shiny

Bioconductor version: 3.23 · Package version: 1.8.0

Provides means to interactively visualize guide RNAs (gRNAs) in GuideSet objects via Shiny application. This GUI can be self-contained or as a module within a larger Shiny app. The content of the app reflects the annotations present in the passed GuideSet object, and includes intuitive tools to examine, filter, and export gRNAs, thereby making gRNA design more user-friendly.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("crisprShiny")

Details

MaintainerJean-Philippe Fortin <fortin946@gmail.com>
AuthorJean-Philippe Fortin [aut, cre], Luke Hoberecht [aut]
LicenseMIT + file LICENSE
URLhttps://github.com/crisprVerse/crisprShiny
Bug Reportshttps://github.com/crisprVerse/crisprShiny/issues
Downloads rank161
Source branchRELEASE_3_23
biocViewsCRISPR, FunctionalGenomics, GUI, GeneTarget, Software

Documentation

Download

Dependencies

Depends: R (>= 4.4.0), shiny

Imports: BiocGenerics, Biostrings, BSgenome, crisprBase, crisprDesign, crisprScore, crisprViz, DT, Seqinfo, htmlwidgets, methods, pwalign, S4Vectors, shinyBS, shinyjs, utils, waiter

Suggests: BiocStyle, knitr, rmarkdown, shinyFeedback, testthat (>= 3.0.0), BSgenome.Hsapiens.UCSC.hg38