crisprShiny
Exploring curated CRISPR gRNAs via Shiny
Bioconductor version: 3.23 · Package version: 1.8.0
Provides means to interactively visualize guide RNAs (gRNAs) in GuideSet objects via Shiny application. This GUI can be self-contained or as a module within a larger Shiny app. The content of the app reflects the annotations present in the passed GuideSet object, and includes intuitive tools to examine, filter, and export gRNAs, thereby making gRNA design more user-friendly.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("crisprShiny") Details
| Maintainer | Jean-Philippe Fortin <fortin946@gmail.com> |
| Author | Jean-Philippe Fortin [aut, cre], Luke Hoberecht [aut] |
| License | MIT + file LICENSE |
| URL | https://github.com/crisprVerse/crisprShiny |
| Bug Reports | https://github.com/crisprVerse/crisprShiny/issues |
| Downloads rank | 161 |
| Source branch | RELEASE_3_23 |
| biocViews | CRISPR, FunctionalGenomics, GUI, GeneTarget, Software |
Documentation
Download
Dependencies
Depends: R (>= 4.4.0), shiny
Imports: BiocGenerics, Biostrings, BSgenome, crisprBase, crisprDesign, crisprScore, crisprViz, DT, Seqinfo, htmlwidgets, methods, pwalign, S4Vectors, shinyBS, shinyjs, utils, waiter
Suggests: BiocStyle, knitr, rmarkdown, shinyFeedback, testthat (>= 3.0.0), BSgenome.Hsapiens.UCSC.hg38