Bioc2026 Registration Open!

cqn

Conditional quantile normalization

Bioconductor version: 3.23 · Package version: 1.58.0

A normalization tool for RNA-Seq data, implementing the conditional quantile normalization method.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cqn")

Details

MaintainerKasper Daniel Hansen <kasperdanielhansen@gmail.com>
AuthorJean (Zhijin) Wu, Kasper Daniel Hansen
LicenseArtistic-2.0
Downloads rank591
Source branchRELEASE_3_23
biocViewsDifferentialExpression, ImmunoOncology, Preprocessing, RNASeq, Software

Documentation

Download

Dependencies

Depends: R (>= 2.10.0), mclust

Imports: splines, graphics, nor1mix, stats, quantreg

Suggests: scales, edgeR

Reverse dependencies

Depends On Me (1): KnowSeq

Imports Me (2): GeoTcgaData, tweeDEseq