compEpiTools

Tools for computational epigenomics

Bioconductor version: 3.23 · Package version: 1.46.0

Tools for computational epigenomics developed for the analysis, integration and simultaneous visualization of various (epi)genomics data types across multiple genomic regions in multiple samples.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("compEpiTools")

Details

Maintainer	Mattia Furlan <mattia.furlan@iit.it>
Author	Mattia Pelizzola [aut], Kamal Kishore [aut], Mattia Furlan [ctb, cre]
License	GPL
Downloads rank	414
Source branch	RELEASE_3_23
biocViews	Coverage, GeneExpression, GenomeAnnotation, Sequencing, Software, Visualization

Documentation

compEpiTools

Download

Source package

Dependencies

Depends: R (>= 3.5.0), methods, topGO, GenomicRanges

Imports: AnnotationDbi, BiocGenerics, Biostrings, Rsamtools, parallel, grDevices, gplots, IRanges, GenomicFeatures, XVector, methylPipe, GO.db, S4Vectors, Seqinfo

Suggests: BSgenome.Mmusculus.UCSC.mm9, TxDb.Mmusculus.UCSC.mm9.knownGene, org.Mm.eg.db, knitr, rtracklayer