clustifyrdatahub

External data sets for clustifyr in ExperimentHub

Bioconductor version: 3.23 · Package version: 1.22.0

References made from external single-cell mRNA sequencing data sets, stored as average gene expression matrices. For use with clustifyr <https://bioconductor.org/packages/clustifyr> to assign cell type identities.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("clustifyrdatahub")

Details

Maintainer	Kent Riemondy <kent.riemondy@cuanschutz.edu>
Author	Rui Fu [aut] (ORCID: <https://orcid.org/0000-0001-8183-4549>), Kent Riemondy [aut, cre] (ORCID: <https://orcid.org/0000-0003-0750-1273>), RNA Bioscience Initiative [fnd], Austin Gillen [ctb] (ORCID: <https://orcid.org/0000-0003-2928-6308>), Jay Hesselberth [ctb] (ORCID: <https://orcid.org/0000-0002-6299-179X>), Sidhant Puntambekar [ctb]
License	MIT + file LICENSE
URL	https://rnabioco.github.io/clustifyrdatahub/
Bug Reports	https://github.com/rnabioco/clustifyrdatahub/issues
Downloads rank	110
Source branch	RELEASE_3_23
biocViews	ExperimentData, ExperimentHub, ExpressionData, MicroarrayData, PackageTypeData, RNASeqData, SequencingData, SingleCellData

Download

Source package

Dependencies

Depends: R (>= 4.0), ExperimentHub

Imports: utils

Suggests: clustifyr, Seurat, usethis, rmarkdown, knitr, tidyr, BiocStyle