clevRvis
Visualization Techniques for Clonal Evolution
Bioconductor version: 3.23 · Package version: 1.12.0
clevRvis provides a set of visualization techniques for clonal evolution. These include shark plots, dolphin plots and plaice plots. Algorithms for time point interpolation as well as therapy effect estimation are provided. Phylogeny-aware color coding is implemented. A shiny-app for generating plots interactively is additionally provided.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("clevRvis")Details
| Maintainer | Sarah Sandmann <sarah.sandmann@uni-muenster.de> |
| Author | Sarah Sandmann [aut, cre] (ORCID: <https://orcid.org/0000-0002-5011-0641>) |
| License | LGPL-3 |
| URL | https://github.com/sandmanns/clevRvis |
| Bug Reports | https://github.com/sandmanns/clevRvis/issues |
| Downloads rank | 181 |
| Source branch | RELEASE_3_23 |
| biocViews | ShinyApps, Software, Visualization |
Documentation
Download
Dependencies
Imports: shiny, ggraph, igraph, ggiraph, cowplot, htmlwidgets, readxl, dplyr, readr, purrr, tibble, patchwork, R.utils, shinyWidgets, colorspace, shinyhelper, shinycssloaders, ggnewscale, shinydashboard, DT, colourpicker, grDevices, methods, utils, stats, ggplot2, magrittr, tools