chevreulShiny
Tools for managing SingleCellExperiment objects as projects
Bioconductor version: 3.23 · Package version: 1.4.0
Tools for managing SingleCellExperiment objects as projects. Includes functions for analysis and visualization of single-cell data. Also included is a shiny app for visualization of pre-processed scRNA data. Supported by NIH grants R01CA137124 and R01EY026661 to David Cobrinik.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("chevreulShiny")Details
| Maintainer | Kevin Stachelek <kevin.stachelek@gmail.com> |
| Author | Kevin Stachelek [aut, cre] (ORCID: <https://orcid.org/0000-0003-2085-695X>), Bhavana Bhat [aut] |
| License | MIT + file LICENSE |
| URL | https://github.com/whtns/chevreulShiny, https://whtns.github.io/chevreulShiny/ |
| Bug Reports | https://github.com/cobriniklab/chevreulShiny/issues |
| Downloads rank | 150 |
| Source branch | RELEASE_3_23 |
| biocViews | Coverage, DataImport, DimensionReduction, GeneExpression, Normalization, Preprocessing, QualityControl, RNASeq, Sequencing, SingleCell, Software, Transcription, Transcriptomics, Visualization |
Documentation
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Dependencies
Depends: R (>= 4.5.0), SingleCellExperiment, shiny (>= 1.6.0), shinydashboard, chevreulProcess, chevreulPlot
Imports: alabaster.base, clustree, ComplexHeatmap, DataEditR (>= 0.0.9), DBI, dplyr, DT, EnhancedVolcano, fs, future, ggplot2, ggplotify, grDevices, methods, patchwork, plotly, purrr, rappdirs, readr, RSQLite, S4Vectors, scales, shinyFiles, shinyhelper, shinyjs, shinyWidgets, stats, stringr, tibble, tidyr, tidyselect, utils, waiter, wiggleplotr
Suggests: BiocStyle, knitr, RefManageR, rmarkdown, testthat (>= 3.0.0), EnsDb.Mmusculus.v79, EnsDb.Hsapiens.v86