chevreulPlot

Plots used in the chevreulPlot package

Bioconductor version: 3.23 · Package version: 1.4.0

Tools for plotting SingleCellExperiment objects in the chevreulPlot package. Includes functions for analysis and visualization of single-cell data. Supported by NIH grants R01CA137124 and R01EY026661 to David Cobrinik.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("chevreulPlot")

Details

Maintainer	Kevin Stachelek <kevin.stachelek@gmail.com>
Author	Kevin Stachelek [aut, cre] (ORCID: <https://orcid.org/0000-0003-2085-695X>), Bhavana Bhat [aut]
License	MIT + file LICENSE
URL	https://github.com/whtns/chevreulPlot, https://whtns.github.io/chevreulPlot/
Bug Reports	https://github.com/cobriniklab/chevreulPlot/issues
Downloads rank	151
Source branch	RELEASE_3_23
biocViews	Coverage, DataImport, DimensionReduction, GeneExpression, Normalization, Preprocessing, QualityControl, RNASeq, Sequencing, SingleCell, Software, Transcription, Transcriptomics, Visualization

Documentation

Download

Source package

Dependencies

Depends: R (>= 4.5.0), SingleCellExperiment, chevreulProcess

Imports: base, cluster, clustree, ComplexHeatmap (>= 2.5.4), circlize, dplyr, EnsDb.Hsapiens.v86, forcats, fs, ggplot2, grid, plotly, purrr, S4Vectors, scales, scater, scran, scuttle, stats, stringr, tibble, tidyr, utils, wiggleplotr (>= 1.13.1), tidyselect, patchwork

Suggests: BiocStyle, knitr, RefManageR, rmarkdown, testthat (>= 3.0.0)

Reverse dependencies

Depends On Me (1): chevreulShiny