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cfToolsData

ExperimentHub data for the cfTools package

Bioconductor version: 3.23 · Package version: 1.10.0

The cfToolsData package supplies the data for the cfTools package. It contains two pre-trained deep neural network (DNN) models for the cfSort function. Additionally, it includes the shape parameters of beta distribution characterizing methylation markers associated with four tumor types for the CancerDetector function, as well as the parameters characterizing methylation markers specific to 29 primary human tissue types for the cfDeconvolve function.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cfToolsData")

Details

MaintainerRan Hu <huran@ucla.edu>
AuthorRan Hu [aut, cre] (ORCID: <https://orcid.org/0000-0002-0563-8957>), Shuo Li [aut] (ORCID: <https://orcid.org/0000-0002-1960-6016>), Xianghong Jasmine Zhou [aut] (ORCID: <https://orcid.org/0000-0002-4522-7490>), Wenyuan Li [aut] (ORCID: <https://orcid.org/0000-0002-5029-8525>)
Licensefile LICENSE
URLhttps://github.com/jasminezhoulab/cfToolsData
Bug Reportshttps://github.com/jasminezhoulab/cfToolsData/issues
Downloads rank104
Source branchRELEASE_3_23
biocViewsCancerData, DiseaseModel, ExperimentData, ExperimentHub, ReproducibleResearch, Tissue

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Dependencies

Depends: R (>= 4.3.0)

Imports: utils, ExperimentHub

Suggests: BiocStyle, knitr, rmarkdown, ExperimentHubData, testthat (>= 3.0.0)

Reverse dependencies

Imports Me (1): cfTools