cfToolsData
ExperimentHub data for the cfTools package
Bioconductor version: 3.23 · Package version: 1.10.0
The cfToolsData package supplies the data for the cfTools package. It contains two pre-trained deep neural network (DNN) models for the cfSort function. Additionally, it includes the shape parameters of beta distribution characterizing methylation markers associated with four tumor types for the CancerDetector function, as well as the parameters characterizing methylation markers specific to 29 primary human tissue types for the cfDeconvolve function.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("cfToolsData") Details
| Maintainer | Ran Hu <huran@ucla.edu> |
| Author | Ran Hu [aut, cre] (ORCID: <https://orcid.org/0000-0002-0563-8957>), Shuo Li [aut] (ORCID: <https://orcid.org/0000-0002-1960-6016>), Xianghong Jasmine Zhou [aut] (ORCID: <https://orcid.org/0000-0002-4522-7490>), Wenyuan Li [aut] (ORCID: <https://orcid.org/0000-0002-5029-8525>) |
| License | file LICENSE |
| URL | https://github.com/jasminezhoulab/cfToolsData |
| Bug Reports | https://github.com/jasminezhoulab/cfToolsData/issues |
| Downloads rank | 104 |
| Source branch | RELEASE_3_23 |
| biocViews | CancerData, DiseaseModel, ExperimentData, ExperimentHub, ReproducibleResearch, Tissue |
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Dependencies
Depends: R (>= 4.3.0)
Imports: utils, ExperimentHub
Suggests: BiocStyle, knitr, rmarkdown, ExperimentHubData, testthat (>= 3.0.0)
Reverse dependencies
Imports Me (1): cfTools