cellmigRation

Track Cells, Analyze Cell Trajectories and Compute Migration Statistics

Bioconductor version: 3.23 · Package version: 1.20.0

Import TIFF images of fluorescently labeled cells, and track cell movements over time. Parallelization is supported for image processing and for fast computation of cell trajectories. In-depth analysis of cell trajectories is enabled by 15 trajectory analysis functions.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cellmigRation")

Details

Maintainer	Waldir Leoncio <w.l.netto@medisin.uio.no>
Author	Salim Ghannoum [aut, cph], Damiano Fantini [aut, cph], Waldir Leoncio [cre, aut], Øystein Sørensen [aut]
License	GPL-2
URL	https://github.com/ocbe-uio/cellmigRation/
Bug Reports	https://github.com/ocbe-uio/cellmigRation/issues
Downloads rank	221
Source branch	RELEASE_3_23
biocViews	CellBiology, DataImport, DataRepresentation, Software

Documentation

cellmigRation

Download

Source package

Dependencies

Depends: R (>= 4.1), methods, foreach

Imports: tiff, graphics, stats, utils, reshape2, parallel, doParallel, grDevices, matrixStats, FME, SpatialTools, sp, vioplot, FactoMineR, Hmisc

Suggests: knitr, rmarkdown, dplyr, ggplot2, RUnit, BiocGenerics, BiocManager, kableExtra, rgl