celldex

Index of Reference Cell Type Datasets

Bioconductor version: 3.23 · Package version: 1.22.0

Provides a collection of reference expression datasets with curated cell type labels, for use in procedures like automated annotation of single-cell data or deconvolution of bulk RNA-seq.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("celldex")

Details

Maintainer	Aaron Lun <infinite.monkeys.with.keyboards@gmail.com>
Author	Dvir Aran [aut], Aaron Lun [aut, cre, cph], Daniel Bunis [aut], Jared Andrews [aut], Friederike Dündar [aut]
License	GPL-3
URL	https://github.com/LTLA/celldex
Bug Reports	https://support.bioconductor.org/
Downloads rank	5372
Source branch	RELEASE_3_23
biocViews	ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SequencingData

Download

Source package

Dependencies

Depends: SummarizedExperiment

Imports: utils, methods, Matrix, ExperimentHub, AnnotationHub, AnnotationDbi, S4Vectors, DelayedArray, DelayedMatrixStats, gypsum, alabaster.base, alabaster.matrix, alabaster.se, DBI, RSQLite, jsonlite

Suggests: testthat, knitr, rmarkdown, BiocStyle, DT, jsonvalidate, BiocManager, ensembldb

Reverse dependencies

Imports Me (1): singleCellTK

Suggests Me (6): ontoProc, scDiagnostics, scGraphVerse, SingleR, sketchR, tidySingleCellExperiment