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canceR

A Graphical User Interface for accessing and modeling the Cancer Genomics Data of MSKCC

Bioconductor version: 3.23 · Package version: 1.46.0

The package is user friendly interface based on the cgdsr and other modeling packages to explore, compare, and analyse all available Cancer Data (Clinical data, Gene Mutation, Gene Methylation, Gene Expression, Protein Phosphorylation, Copy Number Alteration) hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center (MSKCC).

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("canceR")

Details

MaintainerKarim Mezhoud <kmezhoud@gmail.com>
AuthorKarim Mezhoud. Nuclear Safety & Security Department. Nuclear Science Center of Tunisia.
LicenseGPL-2
Bug Reportshttps://github.com/kmezhoud/canceR/issues
System RequirementsTktable, BWidget
Downloads rank350
Source branchRELEASE_3_23
biocViewsClustering, GO, GUI, GeneExpression, GeneSetEnrichment, KEGG, MultipleComparison, Software

Documentation

Download

Dependencies

Depends: R (>= 4.3), tcltk, cBioPortalData

Imports: GSEABase, tkrplot, geNetClassifier, RUnit, Formula, rpart, survival, Biobase, phenoTest, circlize, plyr, tidyr, dplyr, graphics, stats, utils, grDevices, R.oo, R.methodsS3

Suggests: testthat (>= 3.1), knitr, rmarkdown, BiocStyle