bugsigdbr

R-side access to published microbial signatures from BugSigDB

Bioconductor version: 3.23 · Package version: 1.18.0

The bugsigdbr package implements convenient access to bugsigdb.org from within R/Bioconductor. The goal of the package is to facilitate import of BugSigDB data into R/Bioconductor, provide utilities for extracting microbe signatures, and enable export of the extracted signatures to plain text files in standard file formats such as GMT.

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("bugsigdbr")