bugphyzz
A harmonized data resource and software for enrichment analysis of microbial physiologies
Bioconductor version: 3.23 · Package version: 1.6.0
bugphyzz is an electronic database of standardized microbial annotations. It facilitates the creation of microbial signatures based on shared attributes, which are utilized for bug set enrichment analysis. The data also includes annotations imputed with ancestra state reconstruction methods.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("bugphyzz") Details
| Maintainer | Samuel Gamboa <Samuel.Gamboa.Tuz@gmail.com> |
| Author | Samuel Gamboa [aut, cre] (ORCID: <https://orcid.org/0000-0002-6863-7943>), Levi Waldron [aut] (ORCID: <https://orcid.org/0000-0003-2725-0694>), Kelly Eckenrode [aut], Jonathan Ye [aut], Jennifer Wokaty [aut] |
| License | Artistic-2.0 |
| URL | https://github.com/waldronlab/bugphyzz |
| Bug Reports | https://github.com/waldronlab/bugphyzz/issues |
| Downloads rank | 91 |
| Source branch | RELEASE_3_23 |
| biocViews | ExperimentData, MicrobiomeData, ReproducibleResearch |
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Dependencies
Depends: R (>= 4.4)
Imports: dplyr, utils, purrr, stringr, tidyr, tidyselect, BiocFileCache, httr2, tools, S4Vectors
Suggests: DT, forcats, ggplot2, htmltools, knitr, rmarkdown, sessioninfo, testthat, EnrichmentBrowser, MicrobiomeBenchmarkData, mia, stats, rlang, limma, mgsub, methods, readr, crayon, tibble, magrittr, tidytext, BiocStyle