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borealis

Bisulfite-seq OutlieR mEthylation At singLe-sIte reSolution

Bioconductor version: 3.23 · Package version: 1.16.0

Borealis is an R library performing outlier analysis for count-based bisulfite sequencing data. It detectes outlier methylated CpG sites from bisulfite sequencing (BS-seq). The core of Borealis is modeling Beta-Binomial distributions. This can be useful for rare disease diagnoses.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("borealis")

Details

MaintainerGarrett Jenkinson <gargar934@gmail.com>
AuthorGarrett Jenkinson [aut, cre] (ORCID: <https://orcid.org/0000-0003-2548-098X>)
LicenseGPL-3
Downloads rank241
Source branchRELEASE_3_23
biocViewsCoverage, DNAMethylation, DifferentialMethylation, Sequencing, Software

Documentation

Download

Dependencies

Depends: R (>= 4.2.0), Biobase

Imports: doParallel, snow, purrr, plyr, foreach, gamlss, gamlss.dist, bsseq, methods, DSS, R.utils, utils, stats, ggplot2, cowplot, dplyr, rlang, GenomicRanges

Suggests: BiocStyle, knitr, rmarkdown, RUnit, BiocGenerics, annotatr, tidyr, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db