borealis
Bisulfite-seq OutlieR mEthylation At singLe-sIte reSolution
Bioconductor version: 3.23 · Package version: 1.16.0
Borealis is an R library performing outlier analysis for count-based bisulfite sequencing data. It detectes outlier methylated CpG sites from bisulfite sequencing (BS-seq). The core of Borealis is modeling Beta-Binomial distributions. This can be useful for rare disease diagnoses.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("borealis") Details
| Maintainer | Garrett Jenkinson <gargar934@gmail.com> |
| Author | Garrett Jenkinson [aut, cre] (ORCID: <https://orcid.org/0000-0003-2548-098X>) |
| License | GPL-3 |
| Downloads rank | 241 |
| Source branch | RELEASE_3_23 |
| biocViews | Coverage, DNAMethylation, DifferentialMethylation, Sequencing, Software |
Documentation
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Dependencies
Depends: R (>= 4.2.0), Biobase
Imports: doParallel, snow, purrr, plyr, foreach, gamlss, gamlss.dist, bsseq, methods, DSS, R.utils, utils, stats, ggplot2, cowplot, dplyr, rlang, GenomicRanges
Suggests: BiocStyle, knitr, rmarkdown, RUnit, BiocGenerics, annotatr, tidyr, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db