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bodymapRat

Experimental dataset from the rat BodyMap project

Bioconductor version: 3.23 · Package version: 1.28.0

This package contains a SummarizedExperiment from the Yu et al. (2013) paper that performed the rat BodyMap across 11 organs and 4 developmental stages. Raw FASTQ files were downloaded and mapped using STAR. Data is available on ExperimentHub as a data package.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("bodymapRat")

Details

MaintainerStephanie Hicks <shicks19@jhu.edu>
AuthorStephanie Hicks [aut, cre] (ORCID: <https://orcid.org/0000-0002-7858-0231>), Kwame Okrah [aut]
LicenseCC BY 4.0
Downloads rank137
Source branchRELEASE_3_23
biocViewsExperimentData, ExperimentHub, ExpressionData, RNASeqData, SequencingData

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Dependencies

Depends: R (>= 3.6.0), SummarizedExperiment, ExperimentHub

Imports: utils

Suggests: rmarkdown, knitr, BiocStyle, testthat

Reverse dependencies

Suggests Me (1): qsmooth