bluster
Clustering Algorithms for Bioconductor
Bioconductor version: 3.23 · Package version: 1.22.0
Wraps common clustering algorithms in an easily extended S4 framework. Backends are implemented for hierarchical, k-means and graph-based clustering. Several utilities are also provided to compare and evaluate clustering results.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("bluster")Details
| Maintainer | Aaron Lun <infinite.monkeys.with.keyboards@gmail.com> |
| Author | Aaron Lun [aut, cre], Stephanie Hicks [ctb], Basil Courbayre [ctb], Tuomas Borman [ctb], Leo Lahti [ctb] |
| License | GPL-3 |
| System Requirements | C++17 |
| Downloads rank | 9001 |
| Source branch | RELEASE_3_23 |
| biocViews | Clustering, GeneExpression, ImmunoOncology, SingleCell, Software, Transcriptomics |
Documentation
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Dependencies
Imports: stats, methods, utils, cluster, Matrix, Rcpp, igraph, S4Vectors, BiocParallel, BiocNeighbors
LinkingTo: Rcpp, assorthead
Suggests: knitr, rmarkdown, testthat, BiocStyle, dynamicTreeCut, scRNAseq, scuttle, scater, scran, pheatmap, viridis, mbkmeans, kohonen, apcluster, DirichletMultinomial, vegan, fastcluster
Reverse dependencies
Imports Me (17): BatChef, Canek, chevreulProcess, clustSIGNAL, concordexR, dandelionR, jrSiCKLSNMF, jvecfor, mia, miaDash, MPAC, poem, scDblFinder, scDiagnostics, scran, scTypeEval, Voyager
Suggests Me (16): anglemania, batchelor, ChromSCape, Coralysis, dittoSeq, GSVA, Ibex, mbkmeans, miaViz, MOSim, mumosa, scLANE, sketchR, spatialHeatmap, SuperCell, SuperCellCyto