blase

Bulk Linking Analysis for Single-cell Experiments

Bioconductor version: 3.23 · Package version: 1.2.0

BLASE is a method for finding where bulk RNA-seq data lies on a single-cell pseudotime trajectory. It uses a fast and understandable approach based on Spearman correlation, with bootstrapping to provide confidence. BLASE can be used to "date" bulk RNA-seq data, annotate cell types in scRNA-seq, and help correct for developmental phenotype differences in bulk RNA-seq experiments.

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("blase")