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blacksheepr

Outlier Analysis for pairwise differential comparison

Bioconductor version: 3.23 · Package version: 1.26.0

Blacksheep is a tool designed for outlier analysis in the context of pairwise comparisons in an effort to find distinguishing characteristics from two groups. This tool was designed to be applied for biological applications such as phosphoproteomics or transcriptomics, but it can be used for any data that can be represented by a 2D table, and has two sub populations within the table to compare.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("blacksheepr")

Details

MaintainerRugglesLab <ruggleslab@gmail.com>
AuthorMacIntosh Cornwell [aut], RugglesLab [cre]
LicenseMIT + file LICENSE
Bug Reportshttps://github.com/ruggleslab/blacksheepr/issues
Downloads rank274
Source branchRELEASE_3_23
biocViewsDifferentialExpression, GeneExpression, RNASeq, Sequencing, Software, Transcription, Transcriptomics

Documentation

Download

Dependencies

Depends: R (>= 3.6)

Imports: grid, stats, grDevices, utils, circlize, viridis, RColorBrewer, ComplexHeatmap, SummarizedExperiment, pasilla

Suggests: testthat (>= 2.1.0), knitr, BiocStyle, rmarkdown, curl