biobroom
Turn Bioconductor objects into tidy data frames
Bioconductor version: 3.23 · Package version: 1.44.0
This package contains methods for converting standard objects constructed by bioinformatics packages, especially those in Bioconductor, and converting them to tidy data. It thus serves as a complement to the broom package, and follows the same the tidy, augment, glance division of tidying methods. Tidying data makes it easy to recombine, reshape and visualize bioinformatics analyses.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("biobroom") Details
| Maintainer | John D. Storey <jstorey@princeton.edu> and Andrew J. Bass <ajbass@emory.edu> |
| Author | Andrew J. Bass, David G. Robinson, Steve Lianoglou, Emily Nelson, John D. Storey, with contributions from Laurent Gatto |
| License | LGPL |
| URL | https://github.com/StoreyLab/biobroom |
| Bug Reports | https://github.com/StoreyLab/biobroom/issues |
| Status | Deprecated |
| Downloads rank | 515 |
| Source branch | RELEASE_3_23 |
| biocViews | DataImport, DifferentialExpression, GeneExpression, MultipleComparison, Proteomics, Regression, Software |
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Dependencies
Depends: R (>= 3.0.0), broom
Imports: dplyr, tidyr, Biobase
Suggests: limma, DESeq2, airway, ggplot2, plyr, GenomicRanges, testthat, magrittr, edgeR, qvalue, knitr, data.table, MSnbase, rmarkdown, SummarizedExperiment
Reverse dependencies
Imports Me (1): TPP