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biobroom

Turn Bioconductor objects into tidy data frames

Bioconductor version: 3.23 · Package version: 1.44.0

This package contains methods for converting standard objects constructed by bioinformatics packages, especially those in Bioconductor, and converting them to tidy data. It thus serves as a complement to the broom package, and follows the same the tidy, augment, glance division of tidying methods. Tidying data makes it easy to recombine, reshape and visualize bioinformatics analyses.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("biobroom")

Details

MaintainerJohn D. Storey <jstorey@princeton.edu> and Andrew J. Bass <ajbass@emory.edu>
AuthorAndrew J. Bass, David G. Robinson, Steve Lianoglou, Emily Nelson, John D. Storey, with contributions from Laurent Gatto
LicenseLGPL
URLhttps://github.com/StoreyLab/biobroom
Bug Reportshttps://github.com/StoreyLab/biobroom/issues
StatusDeprecated
Downloads rank515
Source branchRELEASE_3_23
biocViewsDataImport, DifferentialExpression, GeneExpression, MultipleComparison, Proteomics, Regression, Software

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Dependencies

Depends: R (>= 3.0.0), broom

Imports: dplyr, tidyr, Biobase

Suggests: limma, DESeq2, airway, ggplot2, plyr, GenomicRanges, testthat, magrittr, edgeR, qvalue, knitr, data.table, MSnbase, rmarkdown, SummarizedExperiment

Reverse dependencies

Imports Me (1): TPP