bioCancer

Interactive Multi-Omics Cancers Data Visualization and Analysis

Bioconductor version: 3.23 · Package version: 1.40.0

This package is a Shiny App to visualize and analyse interactively Multi-Assays of Cancer Genomic Data.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("bioCancer")

Maintainer	Karim Mezhoud <kmezhoud@gmail.com>
Author	Karim Mezhoud [aut, cre]
License	AGPL-3 \| file LICENSE
URL	https://kmezhoud.github.io/bioCancer/
Bug Reports	https://github.com/kmezhoud/bioCancer/issues
Downloads rank	361
Source branch	RELEASE_3_23
biocViews	DataRepresentation, GUI, GeneExpression, GeneTarget, MultipleComparison, Network, Pathways, Reactome, Software, Visualization

Dependencies

Depends: R (>= 4.1.0), radiant.data (>= 0.9.1), cBioPortalData, XML (>= 3.98)

Imports: R.oo, R.methodsS3, DT (>= 0.3), dplyr (>= 0.7.2), tidyr, shiny (>= 1.0.5), AlgDesign (>= 1.1.7.3), import (>= 1.1.0), methods, AnnotationDbi, shinythemes, Biobase, geNetClassifier, org.Hs.eg.db, org.Bt.eg.db, DOSE, clusterProfiler, reactome.db, ReactomePA, DiagrammeR (<= 1.01), visNetwork, htmlwidgets, plyr, tibble, GO.db

Suggests: BiocStyle, prettydoc, rmarkdown, knitr, testthat (>= 0.10.0)