beer

Bayesian Enrichment Estimation in R

Bioconductor version: 3.23 · Package version: 1.16.0

BEER implements a Bayesian model for analyzing phage-immunoprecipitation sequencing (PhIP-seq) data. Given a PhIPData object, BEER returns posterior probabilities of enriched antibody responses, point estimates for the relative fold-change in comparison to negative control samples, and more. Additionally, BEER provides a convenient implementation for using edgeR to identify enriched antibody responses.

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("beer")