bedbaser

A BEDbase client

Bioconductor version: 3.23 · Package version: 1.4.0

A client for BEDbase. bedbaser provides access to the API at api.bedbase.org. It also includes convenience functions to import BED files into GRanges objects and BEDsets into GRangesLists.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("bedbaser")

Details

Maintainer	Andres Wokaty <andres.wokaty@sph.cuny.edu>
Author	Andres Wokaty [aut, cre] (ORCID: <https://orcid.org/0009-0008-0900-8793>), Levi Waldron [aut] (ORCID: <https://orcid.org/0000-0003-2725-0694>), NCI [fnd] (GrantNo.: U24CA289073)
License	Artistic License 2.0
URL	https://github.com/waldronlab/bedbaser
Bug Reports	https://github.com/waldronlab/bedbaser/issues
Downloads rank	187
Source branch	RELEASE_3_23
biocViews	DataImport, Software, ThirdPartyClient

Download

Source package

Dependencies

Depends: R (>= 4.5.0)

Imports: AnVIL (>= 1.16.0), BiocFileCache, curl, dplyr, GenomeInfoDb, GenomicRanges, httr, methods, purrr, rtracklayer, rlang, R.utils, stats, stringr, tibble, tidyr, tools, utils

Suggests: BiocStyle, knitr, liftOver, testthat (>= 3.0.0), withr