Bioc2026 Registration Open!

beachmat.tiledb

beachmat bindings for TileDB-backed matrices

Bioconductor version: 3.23 · Package version: 1.4.0

Extends beachmat to initialize tatami matrices from TileDB-backed arrays. This allows C++ code in downstream packages to directly call the TileDB C/C++ library to access array data, without the need for block processing via DelayedArray. Developers only need to import this package to automatically extend the capabilities of beachmat::initializeCpp to TileDBArray instances.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("beachmat.tiledb")

Details

MaintainerAaron Lun <infinite.monkeys.with.keyboards@gmail.com>
AuthorAaron Lun [aut, cre]
LicenseGPL-3
URLhttps://github.com/tatami-inc/beachmat.tiledb
Bug Reportshttps://github.com/tatami-inc/beachmat.tiledb/issues
System RequirementsC++17
Downloads rank131
Source branchRELEASE_3_23
biocViewsDataImport, DataRepresentation, Infrastructure, Software

Documentation

Download

Dependencies

Imports: methods, beachmat, tiledb, TileDBArray, DelayedArray, Rcpp

LinkingTo: Rcpp, assorthead, beachmat

Suggests: testthat, BiocStyle, knitr, rmarkdown, Matrix