beachmat
Compiling Bioconductor to Handle Each Matrix Type
Bioconductor version: 3.23 · Package version: 2.28.0
Provides a consistent C++ class interface for reading from a variety of commonly used matrix types. Ordinary matrices and several sparse/dense Matrix classes are directly supported, along with a subset of the delayed operations implemented in the DelayedArray package. All other matrix-like objects are supported by calling back into R.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("beachmat") Details
| Maintainer | Aaron Lun <infinite.monkeys.with.keyboards@gmail.com> |
| Author | Aaron Lun [aut, cre], Hervé Pagès [aut], Mike Smith [aut] |
| License | GPL-3 |
| URL | https://github.com/tatami-inc/beachmat |
| Bug Reports | https://github.com/tatami-inc/beachmat/issues |
| System Requirements | C++17 |
| Downloads rank | 20411 |
| Source branch | RELEASE_3_23 |
| biocViews | DataImport, DataRepresentation, Infrastructure, Software |
Documentation
Download
Dependencies
Imports: methods, DelayedArray (>= 0.27.2), SparseArray, BiocGenerics, Matrix, Rcpp
LinkingTo: Rcpp, assorthead (>= 1.5.4)
Suggests: testthat, BiocStyle, knitr, rmarkdown, rcmdcheck, BiocParallel, HDF5Array, beachmat.hdf5
Reverse dependencies
Imports Me (15): batchelor, beachmat.hdf5, beachmat.tiledb, BiocSingular, bsseq, DropletUtils, glmGamPoi, mumosa, omicsGMF, PCAtools, scater, scran, scrapper, scuttle, SingleR
Suggests Me (4): BiocNeighbors, mbkmeans, methFuse, scCB2
Links To Me (14): beachmat.hdf5, beachmat.tiledb, BiocNeighbors, BiocSingular, bsseq, dreamlet, DropletUtils, glmGamPoi, mbkmeans, PCAtools, scran, scrapper, scuttle, SingleR