basilisk

Freezing Python Dependencies Inside Bioconductor Packages

Bioconductor version: 3.23 · Package version: 1.24.0

Installs a self-contained conda instance that is managed by the R/Bioconductor installation machinery. This aims to provide a consistent Python environment that can be used reliably by Bioconductor packages. Functions are also provided to enable smooth interoperability of multiple Python environments in a single R session.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("basilisk")

Details

Maintainer	Aaron Lun <infinite.monkeys.with.keyboards@gmail.com>
Author	Aaron Lun [aut, cre, cph], Vince Carey [ctb]
License	GPL-3
Bug Reports	https://github.com/LTLA/basilisk/issues
Downloads rank	4934
Source branch	RELEASE_3_23
biocViews	Infrastructure, Software

Documentation

Freezing Python versions inside Bioconductor packages

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Source package

Dependencies

Depends: reticulate

Imports: utils, methods, parallel, dir.expiry

Suggests: knitr, rmarkdown, BiocStyle, testthat, callr

Reverse dependencies

Depends On Me (1): scviR

Imports Me (30): BiocHail, BiocSklearn, cbpManager, cfTools, densvis, DNAcycP2, DOtools, FLAMES, HiCool, Ibex, immLynx, MACSr, MOFA2, OAtools, ontoProc, orthos, Pirat, Rcwl, recountmethylation, ReUseData, scifer, scPipe, SimBu, sketchR, snifter, spatialDE, StatescopeR, stPipe, velociraptor, zellkonverter

Suggests Me (2): CuratedAtlasQueryR, SUMO