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barcodetrackR

Functions for Analyzing Cellular Barcoding Data

Bioconductor version: 3.23 · Package version: 1.20.0

barcodetrackR is an R package developed for the analysis and visualization of clonal tracking data. Data required is samples and tag abundances in matrix form. Usually from cellular barcoding experiments, integration site retrieval analyses, or similar technologies.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("barcodetrackR")

Details

MaintainerDiego Alexander Espinoza <diego.espinoza@pennmedicine.upenn.edu>
AuthorDiego Alexander Espinoza [aut, cre], Ryland Mortlock [aut]
Licensefile LICENSE
URLhttps://github.com/dunbarlabNIH/barcodetrackR
StatusDeprecated
Downloads rank154
Source branchRELEASE_3_23
biocViewsSequencing, Software, Visualization

Documentation

Download

Dependencies

Depends: R (>= 4.1)

Imports: cowplot, circlize, dplyr, ggplot2, ggdendro, ggridges, graphics, grDevices, magrittr, plyr, proxy, RColorBrewer, rlang, scales, shiny, stats, SummarizedExperiment, S4Vectors, tibble, tidyr, vegan, viridis, utils

Suggests: BiocStyle, knitr, magick, rmarkdown, testthat