bandle
An R package for the Bayesian analysis of differential subcellular localisation experiments
Bioconductor version: 3.23 · Package version: 1.16.0
The Bandle package enables the analysis and visualisation of differential localisation experiments using mass-spectrometry data. Experimental methods supported include dynamic LOPIT-DC, hyperLOPIT, Dynamic Organellar Maps, Dynamic PCP. It provides Bioconductor infrastructure to analyse these data.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("bandle") Details
| Maintainer | Oliver M. Crook <oliver.crook@stats.ox.ac.uk> |
| Author | Oliver M. Crook [aut, cre] (ORCID: <https://orcid.org/0000-0001-5669-8506>), Lisa Breckels [aut] (ORCID: <https://orcid.org/0000-0001-8918-7171>) |
| License | Artistic-2.0 |
| URL | http://github.com/ococrook/bandle |
| Bug Reports | https://github.com/ococrook/bandle/issues |
| Downloads rank | 275 |
| Source branch | RELEASE_3_23 |
| biocViews | Bayesian, Classification, Clustering, DataImport, ImmunoOncology, MassSpectrometry, Proteomics, QualityControl, Software |
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Dependencies
Depends: R (>= 4.1), S4Vectors, Biobase, MSnbase, pRoloc
Imports: Rcpp (>= 1.0.4.6), pRolocdata, lbfgs, ggplot2, dplyr, plyr, knitr, methods, BiocParallel, robustbase, BiocStyle, ggalluvial, ggrepel, tidyr, circlize, graphics, stats, utils, grDevices, rlang, RColorBrewer, gtools, gridExtra, coda (>= 0.19-4)
LinkingTo: Rcpp, RcppArmadillo, BH
Suggests: testthat, interp, fields, pheatmap, viridis, rmarkdown, spelling